Recent publications: Bioimaging and Informatics tigertiger Logo tigertiger Logo    
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  • About me
    • Address
    • C.V.
    • Travel
  • Projects
    • EMDB
    • Computational Bioimaging
      • Particle picking using SVMs
      • Model-free classification of views
      • Extending Chimera
    • Systems biology
      • Protein function
        prediction
      • Soft clustering
      • Network inference
    • Software
      • EMPI
      • TomoPlane
  • Links

Talks

  • C.Best
    NEW BRAINS FOR THE 'SCOPES:
    Next-generation intelligent methods for biological image processing

    Ringberg Departmental Retreat, March 5, 2007.
    [PDF]

  • C.Best
    Challenges for Intelligent Image Processing in Electron Microscopy
    MIT Computational Systems Biology Initiative, Cambridge, MA, November 20, 2006.
    [PDF]

  • C.Best
    Machine learning for single particles
    Donner lab, Lawrence Berkeley National Laboratory, Berkeley, CA, November 17, 2006.
    [PDF]

  • C.Best
    Challenges for Intelligent Image Processing in Electron Microscopy
    Center for Bio-Image Informatics, University of California, Santa Barbara, CA, November 9, 2006.
    [PDF]

  • C. Best:
    XML + numerical data = ?
    Simple conventions for representing data in the computational sciences

    European Bioinformatics Institute, Hinxton, UK, October 13, 2005.
    [PDF]

Papers

  • C. Best:
    Initial Angular Assignment of Projection Views in Single-Particle Electron Microscopy from a Probabilistic Model
    preprint, January 2007.
    [Abstract]

  • M. Tacke, C. Best:
    Automated particle picking in molecular electron microscopy using a Support Vector Machine
    preprint, February 2007.
    [Abstract]

  • C. Best, S. Nickell, W. Baumeister:
    Localization of Protein Complexes by Pattern Recognition
    in: Cellular Electron Microscopy, J. Richard McIntosh, ed., Methods in Cell Biology 79, Academic Press, 2007.
    [Abstract]

  • A. P. Leis, M. Beck, M. Gruska, C. Best, R. Hegerl, W. Baumeister, J. W. Leis:
    Tomographic Imaging of Biological Specimens using Electrons
    IEEE Signal Processing Magazine, {\bf 23}(3), p.95--103, 2006.
    [Abstract]

Posters

  • C. Best, B. Rockel, W. Baumeister:
    Probabilistic kernel models for 3D ML classification of tomographic projections
    4th International Congress on Cryo-Electron Tomography, San Diego, CA, November 5-8, 2006.
    [PDF]

  • C. Best, R. Hegerl, A. Leis, A. Linaroudis, V. Lucic, S. Nickell. J. Ortiz, B. Rockel, W. Baumeister:
    Visual proteomics: Machine learning and pattern recognition problems in 3-D cryo-electron tomography
    Probabilistic Modeling and Machine Learning in Structural and Systems Biology (PMSB 2006), Tuusula, Finland, 17-18 June 2006
    paper [PDF]poster [PDF]

2009-02-17 18:23 CET     xris